ABSTRACT
Background The transmission dynamics of influenza were affected by public health and social measures (PHSMs) implemented globally since early 2020 to mitigate the COVID-19 pandemic. We aimed to assess the effect of COVID-19 PHSMs on the transmissibility of influenza viruses and to predict upcoming influenza epidemics. Methods For this modelling study, we used surveillance data on influenza virus activity for 11 different locations and countries in 2017-22. We implemented a data-driven mechanistic predictive modelling framework to predict future influenza seasons on the basis of pre-COVID-19 dynamics and the effect of PHSMs during the COVID-19 pandemic. We simulated the potential excess burden of upcoming influenza epidemics in terms of fold rise in peak magnitude and epidemic size compared with pre-COVID-19 levels. We also examined how a proactive influenza vaccination programme could mitigate this effect. Findings We estimated that COVID-19 PHSMs reduced influenza transmissibility by a maximum of 17.3% (95% CI 13.3-21.4) to 40.6% (35.2-45.9) and attack rate by 5.1% (1.5-7.2) to 24.8% (20.8-27.5) in the 2019-20 influenza season. We estimated a 10-60% increase in the population susceptibility for influenza, which might lead to a maximum of 1-5-fold rise in peak magnitude and 1-4-fold rise in epidemic size for the upcoming 2022-23 influenza season across locations, with a significantly higher fold rise in Singapore and Taiwan. The infection burden could be mitigated by additional proactive one-off influenza vaccination programmes. Interpretation Our results suggest the potential for substantial increases in infection burden in upcoming influenza seasons across the globe. Strengthening influenza vaccination programmes is the best preventive measure to reduce the effect of influenza virus infections in the community. Copyright (C) 2022 The Author(s). Published by Elsevier Ltd.
ABSTRACT
The spatial spread of COVID-19 during early 2020 in China was primarily driven by outbound travelers leaving the epicenter, Wuhan, Hubei province. Existing studies focus on the influence of aggregated out-bound popula-tion flows originating from Wuhan;however, the impacts of different modes of transportation and the network structure of transportation systems on the early spread of COVID-19 in China are not well understood. Here, we assess the roles of the road, railway, and air transportation networks in driving the spatial spread of COVID-19 in China. We find that the short-range spread within Hubei province was dominated by ground traffic, notably, the railway transportation. In contrast, long-range spread to cities in other provinces was mediated by multiple factors, including a higher risk of case importation associated with air transportation and a larger outbreak size in hub cities located at the center of transportation networks. We further show that, although the dissemination of SARS-CoV-2 across countries and continents is determined by the worldwide air transportation network, the early geographic dispersal of COVID-19 within China is better predicted by the railway traffic. Given the recent emergence of multiple more transmissible variants of SARS-CoV-2, our findings can support a better assessment of the spread risk of those variants and improve future pandemic preparedness and responses.
ABSTRACT
We present an R package developed to quantify coronavirus disease 2019 (COVID-19) importation risk. Quantifying and visualizing the importation risk of COVID-19 from inbound travelers is urgent and imperative to trigger public health responses, especially in the early stages of the COVID-19 pandemic and emergence of new SARS-CoV-2 variants. We provide a general modeling framework to estimate COVID-19 importation risk using estimated pre-symptomatic prevalence of infection and air traffic data from the multi-origin places. We use Hong Kong as a case study to illustrate how our modeling framework can estimate the COVID-19 importation risk into Hong Kong from cities in Mainland China in real time. This R package can be used as a complementary component of the pandemic surveillance system to monitor spread in the next pandemic.
ABSTRACT
Understanding the transmission process is crucial for the prevention and mitigation of COVID-19 spread. This paper contributes to the COVID-19 knowledge by analyzing the incubation period, the transmission rate from close contact to infection, and the properties of multiple-generation transmission. The data regarding these parameters are extracted from a detailed line-list database of 9,120 cases reported in mainland China from January 15 to February 29, 2020. The incubation period of COVID-19 has a mean, median, and mode of 7.83, 7, and 5 days, and, in 12.5% of cases, more than 14 days. The number of close contacts for these cases during the incubation period and a few days before hospitalization follows a log-normal distribution, which may lead to super-spreading events. The disease transmission rate from close contact roughly decreases in line with the number of close contacts with median 0.13. The average secondary cases are 2.10, 1.35, and 2.2 for the first, second, and third generations conditioned on at least one offspring. However, the ratio of no further spread in the 2nd, 3rd, and 4th generations are 26.2, 93.9, and 90.7%, respectively. Moreover, the conditioned reproduction number in the second generation is geometrically distributed. Our findings suggest that, in order to effectively control the pandemic, prevention measures, such as social distancing, wearing masks, and isolating from close contacts, would be the most important and least costly measures. © Copyright © 2021 Zhang, Zhu, Wang, Yang, Liu and Xu.
ABSTRACT
Background:The coronavirus disease 2019 (COVID-19) has raged more than 10 months and it has become a major public health concern. It is necessary to account for the intrinsic mechanisms and reveal the transmission pattern. Method: We collect detailed information of 944 COVID-19 cases in Guangdong province from January 23rd to February 16th. According to the age-structured characteristics, the population is divided into four groups such as child group (0-5 years old), adolescent group (6-19 years old), young and middle-aged group (20-64 years old), elderly group (65 and over years old). Coupling with different age-structured contact patterns, we establish a discrete age-structured COVID-19 model, obtain the basic reproduction number and final size. By Markov Chain Monte Carlo numerical method (MCMC), we identify the model parameters, fit the cumulative cases, calculate eradiation time of disease, infection peak and the peak arrival time, etc.Results: We found that the most infected people are the young and middle-aged individuals;Compared with household quarantine measure, the peak value of hospitalizations among young and middle-aged group in community mode will increase of 41%, and the peak will delay two weeks. By analyzing the proportions of the final sizes associated age groups, it is found that the elderly have a higher susceptibility, while the adolescents have a lower susceptibility. Under the household quarantine measure, if infected individuals have been confirmed in time of half a day, the peak size of hospitalizations will be further reduced, and the peak hospitalization will advance one week. The model reveals social contact patterns for impacting on COVID-19 transmission, and evaluates the effectiveness of household quarantine. Copyright © 2021 Acta Physica Sinica. All rights reserved.
ABSTRACT
After the COVID-19 epidemic leveled off in China, many provinces have started to resume schooling. Long-term contact between students and teachers in such a closed environment in schooling can increase the possibility of the outbreak. Although the school closure can effectively alleviate the epidemic, large-scale students' isolation not only causes social panic but also brings huge social and economic burden, so before the emergence of school epidemics, one should select and adopt more scientific prevention and control measures. In this study, according to the virus excretion of COVID-19 patients in the disease period, the infectious capacity of patients is redefined. After introducing it into the traditional suspected-exposed-infected-removed (SEIR) model, a continuous infection model that is more consistent with the actual transmission of COVID-19 patients is proposed. Secondly, the effective distance between students is calculated through real contact data. Based on the analysis of the effective distance, three types of isolation area prevention and control measures are proposed and compared with the recently proposed digital contact tracking prevention and control measures. Simulating the spread of COVID-19 in schools through real student contact data and continuous infection models, in order to compare the preventions and control effects of various prevention and control measures in the school epidemic situation, and evaluating the social influence of measures by accumulating the number of quarantines when prevention and control measures are adopted, we find that the COVID-19 can lead the cases to happen on a larger scale in the continuous infection model than in the traditional SEIR model, and the prevention and control measures verified in the continuous infection model are more convincing. Using digital contact tracking prevention and control measures in schools can achieve similar results to those in closed schools with the smallest number of quarantines. The research in this paper can help schools choose appropriate prevention and control measures, and the proposed continuous infection model can help researchers more accurately simulate the spread of COVID-19. Copyright © 2020 Acta Physica Sinica. All rights reserved.